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The BEST Healthy Chocolate Chip Muffins

The absolute BEST healthy chocolate chip muffins sweetened with coconut sugar and made gluten free, dairy free and refined sugar free. This easy chocolate chip muffin recipe takes just 30 minutes from start to finish.

Healthy chocolate chip muffins with liner removed and glistening chocolate chips on top.

These healthy muffins are quickly becoming one of my favorite muffin recipes.

They win all the categories: fluffy and moist; easy to make; ingredient list is short; and they take less than 30 minutes to make from tart to finish!

Amazing, right?!

I found inspiration from my health chocolate chip muffin recipe with bananas and decided to adapt the recipe and make these easy chocolate chip muffins.

ingredients for dairy free breakfast before baking.
chocolate chip muffin batter in pan with chocolate chips on top before baking

Ingredients You’ll Need

  • gluten free baking flour – I used measure for measure but any all purpose gluten free baking flour with xanthan gum will work
  • almond flour
  • coconut sugar – you can sub granulated maple sugar or organic cane sugar
  • baking soda, baking soda and salt
  • chocolate chips – I used dairy and refined sugar free chocolate chips
  • eggs
  • unsweetened applesauce
  • almond milk
  • vanilla extract

How to Make Chocolate Chip Muffins

These healthy breakfast muffins are so simple to make so grab some mixing bowls and whisk and let’s get baking!

First, start by stirring together the dry ingredients.

Next, whisk together all the wet ingredients until well blended. Add the dry ingredients to the wet and stir until a batter forms. Stir in half of the chocolate chips.

Line a cupcake pan with 6 liners and distribute the batter between the liners. Top with remaining chocolate chips and bake for 18-20 minutes and golden brown.

Let cool and serve! THAT’S IT!

Healthy chocolate chip muffins with liner removed and glistening chocolate chips on top and cut in half to see the moist and fluffy center.

Commonly Asked Questions about muffins

How to keep muffins moist?

After these muffins are done baking, let them cool completely and then place them into an airtight container for up to 3 days or freeze for up to 3 months.

Is a chocolate chip muffin good for you?

These muffins are made with whole food ingredients and no added refined sugar so that’s an A+ in my book!

Healthy chocolate chip muffins with liner removed and glistening chocolate chips on top.
Print Recipe
5 from 2 votes

The Best Healthy Chocolate Chip Muffins

Meta DescriptiThe absolute BEST healthy chocolate chip muffins sweetened with coconut sugar and made gluten free, dairy free and refined sugar free. This easy chocolate chip muffin recipe takes just 30 minutes from start to finish. on
Pin Recipe
Prep Time10 minutes
Cook Time18 minutes
Total Time28 minutes
Course: Breakfast, Dessert
Cuisine: American
Keyword: chocolate chip, chocolate chip muffins, dairy free muffins, gluten free muffins, healthy muffins
Servings: 6 muffins
Calories: 209kcal
Author: Ciarra Siller

Equipment

  • Muffin Pan
  • Mixing bowls
  • whisk

Ingredients

  • ¾ cup gluten free baking flour all purpose 1:1
  • ¼ cup almond flour
  • cup coconut sugar
  • ¾ tsp baking soda
  • ¾ tsp baking powder
  • ¼ tsp super fine sea salt
  • ¾ cup chocolate chips dairy free and refined sugar free
  • 2 eggs
  • 6 tbsp unsweetened applesauce
  • ¼ cup almond milk
  • 1 tsp vanilla extract

Instructions

  • Preheat the oven to 350 F and prepare a muffin pan with 6 liners. Place the dry ingredients (flours, coconut sugar, baking soda, baking powder, salt and 1/2 cup of the chocolate chips) into a bowl and stir until combined. Set aside.
  • In another bowl, whisk together the eggs, applesauce, almond milk and vanilla until well blended.
  • Add the wet ingredients to the dry and stir until a batter forms. Fold in half of the chocolate chips.
  • Distribute the batter between the liners, top with remaining chocolate chips and bake for 18-20 minutes and toothpick comes out clean when inserted into the center.

Notes

These muffins are best if eaten immediately or stored in an airtight container for up to 3 days. 

Let Us Know What You Think!

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Jenise Jaikins
Jenise Jaikins
4 years ago

5 stars
These were just what was promised and more! They were very easy to make and turned out delicious. Thank you for sharing your talent with us. I already have family members texting me to bring some when we meet in 2 days!

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Kiki
Kiki
3 years ago

Super excited to make these and many other recipes you share!! Do you have the nutritional value per serving? My boyfriend is T1 diabetic so carb count is key 😊

ET
ET
3 years ago

Just made these and they came out both looking and tasting delicious. I must admit, I added a few extra chocolate chips (can never have enough chocolate!) Will definitely be adding this to my “healthy” dessert rotation! Thanks for the great recipe.

Dianna Farchione
Dianna Farchione
3 years ago

5 stars
I have a total sweet tooth and my husband is gluten free so I am always on the hunt for recipes that will satisfy both of us. We both loved these muffins and felt good about the ingredients used! I used large dark chocolate chips and they did not disappoint! Thanks for a great recipe!! 🙂

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Hi!

I'm Ciarra

Welcome to Peanut Butter Plus Chocolate, where I share indulgent dessert recipes. Here you can find healthier versions of your favorite desserts.

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